Package: dpseg 0.1.3

dpseg: Piecewise Linear Segmentation by Dynamic Programming

Piecewise linear segmentation of ordered data by a dynamic programming algorithm. The algorithm was developed for time series data, e.g. growth curves, and for genome-wide read-count data from next generation sequencing, but is broadly applicable. Generic implementations of dynamic programming routines allow to scan for optimal segmentation parameters and test custom segmentation criteria ("scoring functions").

Authors:Rainer Machne [aut, cre], Peter F. Stadler [aut]

dpseg_0.1.3.tar.gz
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dpseg_0.1.3.tar.gz(r-4.5-noble)dpseg_0.1.3.tar.gz(r-4.4-noble)
dpseg_0.1.3.tgz(r-4.4-emscripten)dpseg_0.1.3.tgz(r-4.3-emscripten)
dpseg.pdf |dpseg.html
dpseg/json (API)

# Install 'dpseg' in R:
install.packages('dpseg', repos = c('https://raim.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://gitlab.com/raim/dpseg

Uses libs:
  • c++– GNU Standard C++ Library v3
Datasets:
  • oddata - Escherichia coli growth curves.

On CRAN:

Conda:

cpp

4.71 score 1 packages 17 scripts 182 downloads 8 exports 1 dependencies

Last updated 1 months agofrom:6206a2395d. Checks:1 OK, 11 WARNING. Indexed: yes.

TargetResultLatest binary
Doc / VignettesOKMar 20 2025
R-4.5-win-x86_64WARNINGMar 20 2025
R-4.5-mac-x86_64WARNINGMar 20 2025
R-4.5-mac-aarch64WARNINGMar 20 2025
R-4.5-linux-x86_64WARNINGMar 20 2025
R-4.4-win-x86_64WARNINGMar 20 2025
R-4.4-mac-x86_64WARNINGMar 20 2025
R-4.4-mac-aarch64WARNINGMar 20 2025
R-4.4-linux-x86_64WARNINGMar 20 2025
R-4.3-win-x86_64WARNINGMar 20 2025
R-4.3-mac-x86_64WARNINGMar 20 2025
R-4.3-mac-aarch64WARNINGMar 20 2025

Exports:addLmbacktrace_rdpsegdpseg_oldestimatePmoviescanPsgtable

Dependencies:Rcpp

Piecewise Linear Segmentation by Dynamic Programming

Rendered fromdpseg.Rmdusingknitr::rmarkdownon Mar 20 2025.

Last update: 2025-02-18
Started: 2020-07-30